ToxoDB 3.1: VIIb:4830000..4940000

	Ancillary GBrowse Site for T. gondii
ToxoDB Home	Viewing Microarray Probes	Viewing Inter-Strain Alignments	Viewing Cosmid and BAC Alignments	Viewing Expression Activity

Showing 110 kbp from VIIb, positions 4,830,000 to 4,940,000

Instructions Instructions Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. To center on a location, click the ruler. Use the Scroll/Zoom buttons to change magnification and position. Examples: VIIb:4830000..4940000, Ib:1..50000, Chromosome:Ib, ProbeSetID:AMA1_CDS, ProbeSetID:SNP1_AlleleA, ProbeSetID:SNP_AK106_AlleleA, ProbeSetID:10.m00081, ProbeSetID:25.m00001_AS, ProbeSetID:NonCodingRNA.10_s, ProbeSetID:25.m00001_Intron1, ProbeSetID:25.m00186_Exon1, ProbeSetID:BAG1_Promoter.
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Instructions

Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. To center on a location, click the ruler. Use the Scroll/Zoom buttons to change magnification and position.

Examples: VIIb:4830000..4940000, Ib:1..50000, Chromosome:Ib, ProbeSetID:AMA1_CDS, ProbeSetID:SNP1_AlleleA, ProbeSetID:SNP_AK106_AlleleA, ProbeSetID:10.m00081, ProbeSetID:25.m00001_AS, ProbeSetID:NonCodingRNA.10_s, ProbeSetID:25.m00001_Intron1, ProbeSetID:25.m00186_Exon1, ProbeSetID:BAG1_Promoter.

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For the source code for this browser, see the Generic Model Organism Database Project. For questions pertaining to the data presented here, send mail to help@toxodb.org.

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Generic genome browser version 1.64

Scaffolds	SNP density	EST Density
Genetic Markers	Annotation Density

Prugniaud Tachyzoites (Exon Kit; Data for Ib)	Prugniaud Tachyzoites (3-prime Kit)	RH Tachyzoites Histone Marks (H4ac; ChrIb ~1.2-1.8Mb)
Prugniaud Tachyzoites (Merged Data for Ib)	RH Tachyzoites Histone Marks (H3K4me3; ChrIb ~1.2-1.8Mb)	SNP Discovery - SRS2

Probes for Genetic Markers	Transcript Discovery (BLASTX to nr)	Exon Probes for Genes on Ib	ChIP Probes for Select Promoters
Probes for EST-based SNPs	Transcript Discovery (ApiDoTs Clusters)	Intron Probes for Genes on Ib	Resequencing Probes for Select Genes
3'-Biased Probes for Coding Genes	Transcript Discovery (TBLASTN to OrthoMCL)	Antisense Probes for Genes on Ib	All T. gondii Expression Profiling Probes

T. gondii UniGene EST Alignments	TIGR Apicomplexan Gene Indices	FullToxoplasma 5' Reads
T. gondii dbEST Alignments	ApiDoTS Alignments

Draft 3 Annotation Gene Models	TwinScan/Eimeria Gene Models	GlimmerHMM Gene Models	RNA Predictions
GLEAN Gene Models	TwinScan Gene Models	TigrScan Gene Models

Scaffolds	DNA/GC Content	3-frame translation (forward)	REP repeats
Contigs	Repeat Regions	3-frame translation (reverse)

GT1 Scaffolds (Tiling Path)	RH Ia and Ib (Tiling Path)	RH Scaffolds (HSPs)
VEG Scaffolds (Tiling Path)	GT1 Scaffolds (HSPs)	VEG Scaffolds (HSPs)

Genetic Markers	All SNPs (by strain)	All SNPs (coding only)	ME49-VEG Alignment SNPs
EST-based SNPs	All SNPs (by coding potential)	ME49-GT1 Alignment SNPs	ME49-RH Alignment SNPs

ORF150	TBLASTN ALL	BLASTX Apicomplexa	BLASTX Bacteria
BLASTX ALL	BLASTX T. gondii	BLASTX Eukaryota	BLASTX Archaea

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Highlight feature(s) (feature1 feature2...)	Highlight regions (region1:start..end region2:start..end)